Publications

Select publications

Ponce LF*, Bishop SL*, Wacker S, Groves RA and Lewis IA (2024) SCALiR: a web application for automating absolute quantification with mass spectrometry-based metabolomics data. Analytical Chemistry. 96 (17), 6566–6574. doi: 10.1021/acs.analchem.3c04988. *Co-first authors.

Bishop SL*, Solonenka JT*, Giebelhaus RT, Bakker DTR, Li ITS, and Murch SJ (2024) Microbial diversity impacts non-protein amino acid production in cyanobacterial bloom cultures collected from Lake Winnipeg. Toxins. 16 (4), 169, doi: 10.3390/toxins16040169. *Co-first authors.

Mandwal A*, Bishop SL*, Castellanos M, Westlund A, Chaconas G, Davidsen J and Lewis IA (2024). MINNO: An Open Source Software for Refining Metabolic Networks and Investigating Complex Network Activity Using Empirical Metabolomics Data. Analytical Chemistry. 96, 3382-3388. doi: 10.1021/acs.analchem.3c04501. *Co-first authors.

Mohammadi M, Bishop SL, Aburashed R, Luqman S, Groves RA, Bihan DG, Rydzak T and Lewis IA (2022) Microbial containment device: A platform for comprehensive analysis of microbial metabolism without sample preparation. Frontiers in Microbiology. 13:958785. doi: 10.3389/fmicb.2022.958785

Bishop SL, Drikic M, Wacker S, Chen YY, Kozyrskyj AL and Lewis IA (2022) Moving beyond descriptive studies: harnessing metabolomics to elucidate the molecular mechanisms underpinning host-microbiome phenotypes. Mucosal Immunology. doi: 10.1038/s41385-022-00553-4

Groves RA, Mapar M, Aburashed R, Ponce LF, Bishop SL, Rydzak T, Drikic M, Bihan DG, Benediktsson H, Clement F, Gregson DB and Lewis IA (2022) Methods for Quantifying the Metabolic Boundary Fluxes of Cell Cultures in Large Cohorts by High-Resolution Hydrophilic Liquid Chromatography Mass Spectrometry. Analytical Chemistry. 94 (25), 8874-8882. doi: 10.1021/acs.analchem.2c00078

Bishop SL, Tymm FJM, Perry K, Kerkovius JK, Menard F, Brady A, Slater G, Lim DSS, Metcalf J, Banack SA, Cox PA and Murch SJ (2020) Early-earth nonprotein amino acid metabolites in modern cyanobacterial microbialites. Environmental Chemistry Letters. 18, 467-473. doi: 10.1007/s10311-019-00943-4

See full list of publications on Google Scholar.