Publications

Photograph of publications

Below is a partial list of publications that include data collected from the BICF. If you know of others, please send the citation to the Facility Manager.

  • Chung, S., Zhang, M. & Stathopulos, P. B. The 2beta Splice Variation Alters the Structure and Function of the Stromal Interaction Molecule Coiled-Coil Domains. Int. J. Mol. Sci. 19, (2018).
  • Condos, T. E. et al. Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation. EMBO J. (2018). doi:10.15252/embj.2018100014
  • Aguirre, J. D., Dunkerley, K. M., Lam, R., Rusal, M. & Shaw, G. S. Impact of altered phosphorylation on loss of function of juvenile Parkinsonism-associated genetic variants of the E3 ligase parkin. J. Biol. Chem. 293, 6337–6348 (2018).
  • Abdelhameed, M., Aly, S., Lant, J. T., Zhang, X. & Charpentier, P. Energy/Electron Transfer Switch for Controlling Optical Properties of Silicon Quantum Dots. Sci. Rep. 8, 17068 (2018).
  • Cvetkovska, M. et al. Characterization of photosynthetic ferredoxin from the Antarctic alga Chlamydomonas sp. UWO241 reveals novel features of cold adaptation. New Phytol. 219, 588–604 (2018).
  • Wright, D. E., Altaany, Z., Bi, Y., Alperstein, Z. & O’Donoghue, P. Acetylation Regulates Thioredoxin Reductase Oligomerization and Activity. Antioxid. Redox Signal. 29, 377–388 (2018).
  • George, S. et al. Ubiquitin phosphorylated at Ser57 hyper-activates parkin. Biochim. Biophys. acta. Gen. Subj. 1861, 3038–3046 (2017).
  • Bryksa, B. C. & Yada, R. Y. Protein Structure Insights into the Bilayer Interactions of the Saposin-Like Domain of Solanum tuberosum Aspartic Protease. Sci. Rep. 7, 16911 (2017).
  • Maciejewski, A., Prado, V. F., Prado, M. A. M. & Choy, W.-Y. Molecular basis for the interaction between stress-inducible phosphoprotein 1 (STIP1) and S100A1. Biochem. J. 474, 1853–1866 (2017).
  • Khalili Yazdi, A., Namjoshi, S., Hackett, J., Ghonaim, N. & Shilton, B. H. Characterization of a polypeptide-binding site in the DEAD Motor of the SecA ATPase. FEBS letters 591, 3378–3390 (2017).
  • Yazdi, A. K., Vezina, G. C. & Shilton, B. H. An alternate mode of oligomerization for E. coli SecA. Sci. Rep. 7, 11747 (2017).
  • Killoran, R. C., Sowole, M. A., Halim, M. A., Konermann, L. & Choy, W.-Y. Conformational characterization of the intrinsically disordered protein Chibby: Interplay between structural elements in target recognition. Protein Sci.25, 1420–1429 (2016).
  • Laakso, H. A., Marolda, C. L., Pinter, T. B., Stillman, M. J. & Heinrichs, D. E. A Heme-responsive Regulator Controls Synthesis of Staphyloferrin B in Staphylococcus aureus. J. Biol. Chem.291, 29–40 (2016).
  • Maciejewski, A. et al. Domains of STIP1 responsible for regulating PrPC-dependent amyloid-beta oligomer  toxicity. Biochem. J.473, 2119–2130 (2016).
  • Morey, T. M., Albers, S., Shilton, B. H. & Rylett, R. J. Enhanced ubiquitination and proteasomal degradation of catalytically deficient human choline acetyltransferase mutants. J. Neurochem.137, 630–646 (2016).
  • Vahidi, S., Bi, Y., Dunn, S. D. & Konermann, L. Load-dependent destabilization of the gamma-rotor shaft in FOF1 ATP synthase revealed by hydrogen/deuterium-exchange mass spectrometry. Proc. Natl. Acad. Sci. U. S. A.113, 2412–2417 (2016).
  • Jha, V., Bian, C., Xing, G. & Ling, H. Structure and mechanism of error-free replication past the major benzo[a]pyrene adduct by human DNA polymerase kappa. Nucleic Acids Res.44, 4957–4967 (2016).
  • Lee, S. K. et al. Structural Insights into Mitochondrial Calcium Uniporter Regulation by Divalent Cations. Cell Chem. Biol. (2016). doi:10.1016/j.chembiol.2016.07.012
  • Cook, B. W., Barber, K. R., Shilton, B. H. & Shaw, G. S. The HIP2~ubiquitin conjugate forms a non-compact monomeric thioester during di-ubiquitin synthesis. PLoS One10, e0120318 (2015).
  • Killoran, R. C., Fan, J., Yang, D., Shilton, B. H. & Choy, W.-Y. Structural Analysis of the 14-3-3zeta/Chibby Interaction Involved in Wnt/beta-Catenin Signaling. PLoS One10, e0123934 (2015).
  • Kumar, A. et al. Disruption of the autoinhibited state primes the E3 ligase parkin for activation  and catalysis. EMBO J.34, 2506–2521 (2015).
  • Leung, K. K. K. & Shilton, B. H. Quinone reductase 2 is an adventitious target of protein kinase CK2 inhibitors TBBz (TBI) and DMAT. Biochemistry54, 47–59 (2015).
  • Leung, K. K. K. & Shilton, B. H. Binding of DNA-Intercalating Agents to Oxidized and Reduced Quinone Reductase 2. Biochemistry54, 7438–7448 (2015).
  • Hickey, J. L., Simpson, E. J., Hou, J. & Luyt, L. G. An integrated imaging probe design: the synthesis of (99m)Tc/Re-containing macrocyclic peptide scaffolds. Chemistry21, 568–578 (2015).
  • Chong, R. A. et al. Pivotal role for the ubiquitin Y59-E51 loop in lysine 48 polyubiquitination. Proc. Natl. Acad. Sci. U. S. A.111, 8434–8439 (2014).
  • Cooper, J. D., Hannauer, M., Marolda, C. L., Briere, L.-A. K. & Heinrichs, D. E. Identification of a positively charged platform in Staphylococcus aureus HtsA that is essential for ferric staphyloferrin A transport. Biochemistry53, 5060–5069 (2014).
  • Grishin, A. M. et al. Structural basis for the inhibition of host protein ubiquitination by Shigella effector kinase OspG. Structure22, 878–888 (2014).
  • McMurrough, T. A., Dickson, R. J., Thibert, S. M. F., Gloor, G. B. & Edgell, D. R. Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues. Proc. Natl. Acad. Sci. U. S. A.111, E2376-83 (2014).
  • Podkowa, K. J., Briere, L.-A. K., Heinrichs, D. E. & Shilton, B. H. Crystal and solution structure analysis of FhuD2 from Staphylococcus aureus in multiple unliganded conformations and bound to ferrioxamine-B. Biochemistry53, 2017–2031 (2014).
  • Rodriguez, A. D., Dunn, S. D. & Konermann, L. ATP-induced dimerization of the F0F1 epsilon subunit from Bacillus PS3: a hydrogen exchange-mass spectrometry study. Biochemistry53, 4072–4080 (2014).
  • Afrasiabi, R. & Kraatz, H.-B. Sonication-induced coiled fibrous architectures of Boc-L-Phe-L-Lys(Z)-OMe. Chemistry19, 1769–1777 (2013).
  • Arun, V., Wiley, J. C., Kaur, H., Kaplan, D. R. & Guha, A. A novel neurofibromin (NF1) interaction with the leucine-rich pentatricopeptide repeat motif-containing protein links neurofibromatosis type 1 and the French Canadian variant of Leigh’s syndrome in a common molecular complex. J. Neurosci. Res.91, 494–505 (2013).
  • Cino, E. A., Killoran, R. C., Karttunen, M. & Choy, W.-Y. Binding of disordered proteins to a protein hub. Sci. Rep.3, 2305 (2013).
  • Goiko, M. et al. Peptides of Matrix Gla protein inhibit nucleation and growth of hydroxyapatite and calcium oxalate monohydrate crystals. PLoS One8, e80344 (2013).
  • Hedges, J. B., Vahidi, S., Yue, X. & Konermann, L. Effects of ammonium bicarbonate on the electrospray mass spectra of proteins: evidence for bubble-induced unfolding. Anal. Chem.85, 6469–6476 (2013).
  • Khan, H. et al. Fuzzy complex formation between the intrinsically disordered prothymosin alpha and the Kelch domain of Keap1 involved in the oxidative stress response. J. Mol. Biol.425, 1011–1027 (2013).
  • Kleinstiver, B. P., Wolfs, J. M. & Edgell, D. R. The monomeric GIY-YIG homing endonuclease I-BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA. Nucleic Acids Res.41, 5413–5427 (2013).
  • Leung, K. K. K. & Shilton, B. H. Chloroquine binding reveals flavin redox switch function of quinone reductase 2. J. Biol. Chem.288, 11242–11251 (2013).
  • Ostapchenko, V. G. et al. The prion protein ligand, stress-inducible phosphoprotein 1, regulates amyloid-beta oligomer toxicity. J. Neurosci.33, 16552–16564 (2013).
  • Santos, T. G. et al. Laminin-gamma1 chain and stress inducible protein 1 synergistically mediate PrPC-dependent axonal growth via Ca2+ mobilization in dorsal root ganglia neurons. J. Neurochem.124, 210–223 (2013).
  • Soares, I. N. et al. Regulation of stress-inducible phosphoprotein 1 nuclear retention by protein inhibitor of activated STAT PIAS1. Mol. Cell. Proteomics12, 3253–3270 (2013).
  • Spratt, D. E. et al. A molecular explanation for the recessive nature of parkin-linked Parkinson’s disease. Nat. Commun.4, 1983 (2013).
  • Sun, H., Li, X., Li, Y., Fan, L. & Kraatz, H.-B. A novel colorimetric potassium sensor based on the substitution of lead from G-quadruplex. Analyst138, 856–862 (2013).
  • Vahidi, S., Stocks, B. B. & Konermann, L. Partially disordered proteins studied by ion mobility-mass spectrometry: implications for the preservation of solution phase structure in the gas phase. Anal. Chem.85, 10471–10478 (2013).
  • Vahidi, S., Stocks, B. B., Liaghati-Mobarhan, Y. & Konermann, L. Submillisecond protein folding events monitored by rapid mixing and mass spectrometry-based oxidative labeling. Anal. Chem.85, 8618–8625 (2013).
  • Beasley, S. A., Safadi, S. S., Barber, K. R. & Shaw, G. S. Solution structure of the E3 ligase HOIL-1 Ubl domain. Protein Sci.21, 1085–1092 (2012).
  • Beheshti, S., Martic, S. & Kraatz, H.-B. Hierarchical organization of ferrocene-peptides. Chemistry18, 9099–9105 (2012).
  • Dempsey, B. R. et al. Structure of an asymmetric ternary protein complex provides insight for membrane  interaction. Structure20, 1737–1745 (2012).
  • Leung, K. K. K., Litchfield, D. W. & Shilton, B. H. Flavin adenine dinucleotide content of quinone reductase 2: analysis and optimization for structure-function studies. Anal. Biochem.420, 84–89 (2012).
  • Pan, J., Han, J., Borchers, C. H. & Konermann, L. Structure and dynamics of small soluble Abeta(1-40) oligomers studied by top-down hydrogen exchange mass spectrometry. Biochemistry51, 3694–3703 (2012).
  • Souza, I. A. et al. Expression of a recombinant Phoneutria toxin active in calcium channels. Toxicon60, 907–918 (2012).
  • Vahidi, S., Stocks, B. B., Liaghati-Mobarhan, Y. & Konermann, L. Mapping pH-induced protein structural changes under equilibrium conditions by pulsed oxidative labeling and mass spectrometry. Anal. Chem.84, 9124–9130 (2012).