Graduate Course Information

Course Enrollment

Conveniently enroll in your Medical Biophysics graduate courses online through your Student Centre. Explore a complete catalog of Medical Biophysics course offerings, including detailed descriptions, by scrolling down.

Key Details:

  • Ensure timely enrollment by referring to the Registrars' Website for significant dates, including enrollment deadlines and Graduate Course Add/Drop details
  • Remember to enroll online for the second term of every full course, including Winter term (e.g., Biophysics 9513 Scientific Communications).
  • Compulsory CAMPEP Accredited Courses and Schedule

School of Graduate & Postdoctoral Studies Resources:

Stay Informed and On Track:

It's your responsibility as a Medical Biophysics graduate student to remain informed by exploring the provided links and adhering to the deadlines outlined there.

Graduate Courses

Please Note:
All courses with the suffix 'A' are half courses offered in Fall Term.
All course with the suffix 'B' are half courses offered in Winter Term.
All courses with the suffix 'Y' are half courses which may be offered over two academic terms.
All courses with the suffix 'L' are half courses offered in Summer Term.
All courses with no suffix (e.g.Biophysics 9670, and 9700) are full courses offered over 2 terms.
Half courses have an academic credit of 0.5.
Full courses have an academic credit of 1.0.

Full Year

BIOPHYSICS 9706L: Anatomy and Physiology for CAMPEP

This course provides a University level background and training in the fundamentals of anatomy and physiology and covers all the major body systems relevant to CAMPEP training requirements for graduate students, including image representation, cadaveric representation and body systems integrating both structure and function. This course concentrates on exposing students to real-world understandings of human physiology and anatomy as it applies to typical diagnostic and therapeutic clinical physics applications. This course was designed to be alligned with and cover all the the CAMPEP requirements for training in human physiology and anatomy for the PhD-MClSc program.

BIOPHYSICS 9513: Scientific Communications - Compulsory FULL Course

Preparing for Scientific research is compulsory for all 1st year Medical Biophysics graduate students.

Be sure to enroll in Winter term as well.

It involves practical work in oral and written communication related to the student's research. Students are required to participate in a two and ten minute oral presentation on his or her research project. Poster presentations, abstract writing, preparation of writing a paper, grant applications and an overview of ethics, authorship and data representation are also covered. Students are encouraged to take a minimal number of additional courses to supplement their background. With the help of their supervisor, graduate students' courses will be individually selected to contribute to thier background knowledge and research project. Graduate students are also required to present one departmental seminar per year.

Graduate Seminars - Compulsory Milestone

Graduate Seminars is a compulsory Milestone in which all Medical Biophysics graduate students must attend and present during each year of their studies.

Strong oral presentation skills are necessary for success in academia, industry and the public sector. The purpose of this milestone is to provide students with the opportunity to practice their oral presentation and chairing skills via a conference-style venue and to provide a forum for discussion of research.

The Graduate Seminar Speakers Schedule will be posted by the end of August on the OWL site

Fall Term

BIOPHYSICS 9501A: Biophysics of Transport Systems

This course describes the physiology and biophysics of the cardiovascular system (in health and disease), blood flow control and red blood cell distribution, and vascular mechanics in the microcirculation and large vessels, surface energy and interactions at biological interfaces such as the lung, diffusive and convective transport and exchange.

BIOPHYSICS 9509A: Introduction to Digital Image Processing

This introductory course provides a solid background in the fundamentals of digital image processing, and covers many of the major topics in the field, including image representation, 2D linear systems theory and Fourier analysis, digital filtering, registration and segmentation. The course concentrates on those techniques that have proven most useful in practice. A major aim of this course is to expose students to real-world applications of image processing in industry, science and medicine. Through assignments,students will become familiar with the image processing facilities available in the popular MATLAB numeric computation and visualization environment.

BIOPHYSICS 9510A: Hemodynamics (Not available)

This course focuses on delivering an understanding of the fundamentals of steady and pulsatile blood flow in tubes and blood vessels. We will introduce hemodynamic models and the role of non-dimensional parameters. We also focus on the measurement of pressure, flow velocity and distribution as well as the characteristics of flow in large and small blood vessels: geometric factors, measurement techniques and physical alteration of flow by disease.

BIOPHYSICS 9515A: Introduction to Medical Imaging

Through this introductory course the student will learn the physics and methods of how medical images are formed. By the end of the term the student will understand how images are formed for the following different imaging modalities: ultrasound, x-rays, computed tomography, nuclear medicine, positron-emission tomography, and magnetic resonance imaging. To understand the tomographic imaging modalities, the student will also gain knowledge of the Fourier Transform and its applications in medical imaging. A basic understanding of the sources of noise and artifacts in the different modalities will also be attained, along with an understanding of the limits to the achievable resolution.

BIOPHYSICS 9530A: Human Biomechanics With Biomedical Applications

The mechanical properties of biological structures and fluids in relation to function: deformability, strength, and viscoelasticity of hard and soft tissues, modes of loading and failure. Special topics include mechanics of synovial joints, mechanics of hearing, and mechanics of orthopedic implants and joint replacement.

Biophysics 9645A: Intro to Biomedical Optics

An introduction to the physical and biophysical principles underlying the methodology and technology for the medical uses of light including diagnostic, monitoring and therapeutic applications. Specific areas will include: instrumentation which involves light detection and analysis, light spectroscopy which involves photodynamic therapy and diffuse optical tomography and optical imaging.

Biophysics 9650A: Conceptual MRI

The purpose of this course is to provide students with an understanding of the conceptual underpinnings of Magnetic Resonance Imaging. This course will focus on the concepts needed to interpret MR images and design MRI experiments. It is intended for graduate students that will be using MR images in their thesis work, as opposed to students needing an in-depth knowledge of MR physics. Those students should consider BIOPHYS 9662/9663 instead.

BIOPHYSICS 9670: Nuclear Medicine Physics

**First Term - Full Course**
This course covers the concepts and instrumentation associated with clinical nuclear medicine physics. Topics include: atomic and nuclear physics and modes of decay, interaction of radiation and matter, production of radionuclides, radiation detectors and instrumentation, spectrometry and radiation counting, principles of gamma cameras, Single Photon Emission Computed Tomography (SPECT) and Positron emission Tomography (PET), Radiation Safety Practice and Regulations, Tracer Kinetic Modeling, and Internal Radiation Dosimetry. The course is enriched by guest lectures covering medical cyclotrons and other imaging modalities complementary to Nuclear Medicine.

BIOPHYSICS 9672: Practical Radiotherapy Physics

**First Term - Full Course**
This course is designed to provide trainees with a strong background and training in practical medical physics as this relates to radiation therapy physics.

Winter Term

BIOPHYSICS 9507B: Clinical Physics: Practice and Quality Assurance

This is a 0.5-credit course available only to students enrolled in the CAMPEP accredited educational program, and is compulsory for those students.

It is also available to other graduate students and clinical physics residents granted permission by the program and Course Co-ordinator. This course covers radiation detection, dosimetry, and instrumentation in relation to radiation field surveying; legislation governing the use of radiation and nuclear material; production of radioactivity and managing radioactive waste; quality assurance in medical imaging including equipment testing and artifact identification; and the codes and guidelines for the Canadian College of Physicists in Medicine and the Canadian Partnership for Quality Radiotherapy. This course covers compulsory components of the CAMPEP Core Graduate Curriculum not covered by other courses.

BIOPHYSICS 9516B : Advanced Imaging Principles

Not offered in 2024

Medical imaging plays a critical role in modern medicine. Images are used for visualization of lesions, segmentation, region of interest measurements, and many other purposes. This course describes how and why poor image quality (spatial resolution and image noise) can make it difficult to see lesions or make quantitative measurements from medical images, and how to minimize these errors (eg. determine the necessary region of interest size to accurately determine average pixel value). Results are applicable to all imaging modalities, and examples are given for digital radiography, MRI, CT, and ultrasound. A strong emphasis is placed on the effective use of linear-systems theory and the Fourier transform to describe both signal and noise.

BIOPHYSICS 9518B: Molecular Imaging

This course focuses on an introduction to the role of diagnostic imaging in detecting molecules, genes, and cells in vivo. Emphasis will be in how these techniques can help study molecular mechanisms of disease in vivo. Topics include DNA/protein synthesis, transgenic mice, novel contrast agents and small animal imaging.

BIOPHYSICS 9519B: Advanced Image Processing

Digital image processing has various applications ranging from remote sensing and entertainment to medical applications. This course explores a few major areas of digital image processing at an advanced level, with primary emphasis on medical applications. Topics covered include image segmentation, image registration, validation of image processing algorithms, and image processing using 3D Slicer and the Insight Toolkit (ITK). Examples will be presented to give the students exposure to real-world applications.

BIOPHYSICS 9522B: Inferencing from Data Analysis

This course covers most statistical procedures used in experimental research. Data analysis will be conducted using SPSS for Windows. Topics covered include the t-test, various forms of analysis of variance, bivariate correlation, simple and multiple regression, factor analysis, and multivariate analysis of variance to name a few. Students will become familiar with reporting research findings and writing a result section for a scientific manuscript.

BIOPHYSICS 9567B: Radiation Biology Applications

This web-based course consists of lecture slides with dubbed audio, 4 assignments, a mid-term exam of 2 hours, and a final exam of 3 hours. Opportunity for “live” interaction with the Instructor and Teaching Assistant will be provided in the form of scheduled tutorials. This course covers essential material for students in CAMPEP-accredited Medical Physics programs at the graduate or postgraduate residency levels. It is also required by medical postgraduate residency programs in radiation oncology and diagnostic imaging, including nuclear medicine.

The course describes the effects of ionizing radiation on living organisms, from cells to animals. The lectures begin with a brief physical description of the various types of ionizing radiation, the electromagnetic spectrum, and how radiation interacts with atoms. The early physical events produce ionizations and yield chemical radicals that can damage important biological molecules such as water and DNA, leading to either cellular repair or death. The course emphasizes radiation damage to cells and organs, with practical illustrations of applications to cancer therapy. It also reviews the risk-benefit rationale used in government regulations for the controlled use of radiation in research and medicine.

BIOPHYSICS 9663B: MRI Physics

The purpose of this course is to provide an understanding of the principles of magnetic resonance imaging. This course will extend the concepts covered in Physics 9660A: Nuclear Magentic Resonance. The course will focus on the concepts of spatial data encoding (k-­‐space),selective excitation (radio-­‐frequency pulses), image contrast, and image signal to noise ratio. Students will be introduced to various MRI pulse sequences and gain a thorough understanding of the elements required for image formation and the generation of image artefacts. This course serves as the pre-­‐requisite to the advanced graduate magnetic resonance imaging course in Medical Biophysics: Advanced MRI Physics.

BIOPHYSICS 9670: Nuclear Medicine Physics

** Second Term - Full Course**
This course covers the concepts and instrumentation associated with clinical nuclear medicine physics. Topics include: atomic and nuclear physics and modes of decay, interaction of radiation and matter, production of radionuclides, radiation detectors and instrumentation, spectrometry and radiation counting, principles of gamma cameras, Single Photon Emission Computed Tomography (SPECT) and Positron emission Tomography (PET), Radiation Safety Practice and Regulations, Tracer Kinetic Modeling, and Internal Radiation Dosimetry. The course is enriched by guest lectures covering medical cyclotrons and other imaging modalities complementary to Nuclear Medicine.

BIOPHYSICS 9672: Practical Radiotherapy Physics

** Second Term - Full Course**
This course is designed to provide trainees with a strong background and training in practical medical physics as this relates to radiation therapy physics.

BIOPHYSICS 9674B: Pedagogy in Biophysics

In this course, students will develop a formal understanding of pedagogical concepts underlying high quality science curriculum design and delivery at the university level. This understanding will be developed through in-class discussion based coverage of canonical and current research articles in the pedagogy literature, and an application of the learned concepts to the development of a graduate-level course curriculum.

BIOPHYSICS 9708B: Quantitative In-vivo Imaging of Human Physiology

The course will provide a foundation in the main components of PET imaging, which include:Nuclear Physics/Medicine, Radiopharmaceuticals, PET instrumentation, PET image reconstruction and analysis, Pharmacokinetics

In addition to these topics, the course will involve cases studies to provide students with the opportunity to put into practise the principles taught in the lectures. These case studies will focus on brain function, neuroreceptor imaging and oncology, and each will include a review of a published study. Students will be expected to have read the paper prior to class and to participate in the discussion.

BIOPHYS 9709B: Biomedical Applications of Neural Networks

Not Offered Winter 2024

The primary objective of this course is to equip students with the knowledge, experience, and confidence to apply neural networks effectively in their research. To achieve this objective, students will be taught the fundamentals of neural networks, cutting edge network architectures, how to design studies in a scientifically rigorous way, and how to interpret study results. Students will also learn how to implement neural network studies within a Python environment using the best practices and tools currently used by the research community.

Important Course Information

Physics 9660A: Nuclear Magnetic Resonance; Biophysics 9650A: Conceptual MRI; Biophysics 9665A: Advanced MRI Physics; and Biophysics 9663B: MRI Physics

Students performing research on Magnetic Resonance Imaging or Magnetic Resonance Spectroscopy (e.g., developing a new pulse sequence, creating a new image reconstruction method, or designing new MR hardware like a gradient or a coil array) would ordinarily take BIOPHYS 9663. This course will give students a detailed understanding of the fundamental physics underpinning MRI/MRS. Students taking this course should have taken physics and mathematics courses at the undergraduate level.

Students using MRI or MRS as a tool to answer a research question (e.g. performing MRI of an animal model of cancer) but not developing MRI/MRS techniques would ordinarily take BIOPHYS 9650. This course introduces students to the concepts of MRI so that students using MRI will have a solid understanding of the technology. This course covers a similar set of materials as BIOPHYS 9663 but with more emphasis on the concepts underlying MRI/MRI and less on calculating quantitative results. Students taking this course are not expected to have taken physics and mathematics courses at the undergraduate level.

Students who wish to gain exposure to advanced topics in MRI/MRS can consider taking optional modules in BIOPHYS 9663 and will receive increased course credit for doing so (details are in the course syllabus). The optional modules briefly introduce many "hot topics" in modern MRI/MRS research. Students who complete several optional modules will gain a good overview of the current state-of-the-art in MRI/MRS.

Please note that the optional modules in BIOPHYS 9663 replace the former BIOPHYS 9665.